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Mathematical and Computational Medicine Conference 2012

Mathematical and Computational Medicine

 

Chairs Andrzej Kloczkowski (Ohio State University)
Raghu Machiraju (The Ohio State University)
Victor Jin (The Ohio State University)
Location(s)
Occidental Grand Xcaret (****)
Xcaret
Mexico

Travel, Visas and Attractions / Excursions

 
Complex
 
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Date Saturday December 1 2012 - Wednesday December 5 2012

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Synopsis The purpose of the Zing Conference on Mathematical and Computational Medicine is to bring together eminent scholars with expertise in various fields of mathematical and computational medicine, as well as experimentalists and medical doctors interested in application of computational methods in clinical studies. The mathematical and computational medicine is now one of the most important and rapidly growing fields of modern medicine, and will become even more important in nearest future, when the cost of individual human gene sequencing becomes affordable for mass-scale clinical use (The $1000 Human Genome). New sequencing techniques, such as RNA-Seq produce enormous amount of information on the transcriptome in healthy and diseased cells, that need a development of new mathematical and computational methods to extract the most important medical information. The scope of the proposed Zing Conference will cover many different fields mathematical and computational medicine and biomedical informatics, such as genetics, genomics, epigenetics, and epigenomics of various diseases including mental and learning disorders, autism, and somatic diseases, with a special emphasis on cancer, protein misfolding disorders related to amyloid formation in neurogenerative diseases (such as Alzheimer?s and Parkinson?s disease), gene regulation, biomarker development, computer aided drug development, computational pharmacodynamics, computational immunology, systems biology and its extension to systems medicine, machine learning methods in application to biomedical data, applicability of computational methods in personalized medicine, and regenerative medicine. A special session will be devoted to errors in measurements of biomedical data and statistical evidence-based medicine.
Confirmed oral presentations Programme    ·    Talk Titles
Plenary
Andrzej  Joachimiak (Argonne National Laboratory)   Chris Johnson (University of Utah)
David Greenberg (Columbia University)   Hongyu Zhao (Yale University)
Ivet Bahar (University of Pittsburgh )   Jeremy Edwards (University of New Mexico)
Peter Houghton (Nationwide Children's Hospital and The Ohio State University)   Robert Murphy (Carnegie Mellon University)
Wei Li (Baylor College of Medicine)   Wolfgang Sadee (OSU)
Invited
Aleksandra Gruca (Silesian University of Technology)   Banu Ozkan (Arizona State University)
Christopher Bartlett (The Ohio State University)   Cindy Crowninshield (Body Therapeutics/Cambridge Healthtech Institute)
Daisuke Kihara (Purdue University)   Dominik Gront (University of Warsaw, Faculty of Chemistry)
Dongxiao Zhu (Wayne State University)   Eshel Faraggi (IUPUI / RIS)
George Stan (University of Cincinnati)   Gregory Chirikjian (Johns Hopkins University)
Hakon Hakonarson (The Children's Hospital of Philadelphia)   Hamid Eghbalnia (University of Cincinnati)
Hong-Wen Deng (x)   Igor Dvorchik (The Research Institute at Nationwide Children's Hospital)
James Faeder (University of Pittsburgh )   Jarek Meller (University of Cincinnati)
Jayajit Das (Battelle Center for Mathematical Medicine)   Jiang Qian (Johns Hopkins School of Medicine)
Jing Li (Case Western Reserve University )   Katsumi Kitagawa (The Ohio State University)
Long Lu (University of Cincinnati)   Maqsood Chotani (The Research Institute at Nationwide Children's Hospital)
Marek Cieplak (Institute of Physics, Polish Academy of Science)   Mehmet Koyuturk (Case Western Reserve University)
Nathan Price (Institute of Systems Biology )   Pratul Agarwal (Oak Ridge National Laboratory)
Ralf Bundschuh (The Ohio State University)   Richard Ransom (The Research Institute at Nationwide Children's Hospital)
Robert Jernigan (Iowa State University )   Ross Walker (University of California, San Diego)
Ruxandra Dima (University of Cincinnati)   Samuel K. Handelman (The Ohio State University)
Sebastian Kmiecik (University of Warsaw)   Shili  Lin (The Ohio State University)
Will Ray (The Ohio State University)   William Stewart (Battelle Center for Mathematical Medicine)
Xavier Salvatella (Institute for Research in Biomedicine (IRB Barcelona))   Yuan Ji (NorthShore University HealthSystem / The University of Chicago)
Yunlong Liu (Indiana Univ)    
Contributing
Alexey Mazur (CNRS-UPR9080, IBPC)   Cecile Malardier-Jugroot (Royal Military College of Canada)
Feliksas Bukauskas (Albert Einstein College of Medicine)   Jacob Puliyel (St Stephens Hospital)
Saras Saraswathi (Nationwide Children's Hospital)    
Abstract submission Sorry, but all abstract deadlines have passed.

To secure your place at the conference, register now.
 See the 2008 programme
  Register now (Register) to secure your place.

Fees

  Register Standard Student* Payment deadline
Standard   $1400
(All-inclusive package)
$850
(All-inclusive package)
Monday October 1 2012
  All-inclusive package:   (conference, accommodation, all food, drinks, social events, etc.)
* Students will share a twin room.
Prices exclude VAT (where applicable).
 

Multiple attendance discount: 3 or more members from the same lab are eligible for a discount. Please contact us.

Multiple conference discount: We can offer you a discount if you wish to attend multiple conferences. Please contact us.


Extras


  Adult Deadline
Extra nights $160 Monday October 1 2012
Accompanying (Standard) $550 Monday October 1 2012
  Specially-negotiated all-inclusive rates
(including all items listed below, excluding the conference)
 

Flights

Current scheduled flight options & costs
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Pre-registration closed.
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Items included in Mathematical and Computational Medicine conference 2012 fee
·  Conference
·  Abstract submission
·  **** accommodation for 4 nights
·  All group meals (breakfast, lunch, dinner)
·  All refreshments & social events
·  Unlimited local alcoholic beverages and soft drinks (24 hours)
·  Non-motorized watersports
·  and more....
 


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Mathematical and Computational Medicine conference 2012 schedule

Programme
Talk Titles

Register now.

Confirmed oral presentations

Aleksandra Gruca (Silesian University of Technology)
Functional description of gene groups by means of logical rules based on Gene Ontology
Alexey Mazur (CNRS-UPR9080, IBPC)
Anharmoinc Elasticity of DNA Studied by All-Atom Simulations
Andrzej Joachimiak (Argonne National Laboratory)
Banu Ozkan (Arizona State University)
Cecile Malardier-Jugroot (Royal Military College of Canada)
Simulation of nanotechnology-based drug carrier for targeted drug delivery
Chris Johnson (University of Utah)
Image-Based Biomedical Modeling, Simulation and Visualization
Christopher Bartlett (The Ohio State University)
Cindy Crowninshield (Body Therapeutics/Cambridge Healthtech Institute)
Daisuke Kihara (Purdue University)
Binding Ligand Prediction by Comparing Local Surface Patches of Potential Pocket Regions
David Greenberg (Columbia University)
A critical examination of the current state of genetic studies of common disease.
Dominik Gront (University of Warsaw, Faculty of Chemistry)
Comparative Modeling of Protein Structures in Post-Genomic Era
Dongxiao Zhu (Wayne State University)
Transcriptome reconstruction using RNA-seq
Eshel Faraggi (IUPUI / RIS)
The role of protein disorder in species evolution
Feliksas Bukauskas (Albert Einstein College of Medicine)
Combined application of stochastic 16-state models of voltage-gating and Global Optimization algorithms in evaluating gating parameters of gap junction channels enclosing fast and slow gates
George Stan (University of Cincinnati)
Computer Simulations of Protein Unfolding and Translocation by Ring Nanomachines in the Degradation Pathway
Gregory Chirikjian (Johns Hopkins University)
Mathematical Aspects of Molecular Replacement
Hakon Hakonarson (The Children's Hospital of Philadelphia)
Hamid Eghbalnia (University of Cincinnati)
Hong-Wen Deng (x)
Hongyu Zhao (Yale University)
DISEASE RISK PREDICTION FROM GENOME-WIDE ASSOCIATION DATA
Igor Dvorchik (The Research Institute at Nationwide Children's Hospital)
evoluation of hepatocellular carcinoma recurrence model
Ivet Bahar (University of Pittsburgh )
Bridging between Protein Structural Dynamics and Sequence Evolution
Jacob Puliyel (St Stephens Hospital)
Monitoring RCT using CUSUM Can Save Lives
James Faeder (University of Pittsburgh )
Jarek Meller (University of Cincinnati)
Prediction of Classical HLA Alleles from SNP Data
Jayajit Das (Battelle Center for Mathematical Medicine)
Jeremy Edwards (University of New Mexico)
Spatial Stochastic Models of EGFR: Membrane domains promote repeated interactions, increasing dimerization probability & signal propagation.
Jiang Qian (Johns Hopkins School of Medicine)
Construction of a high-resolution map of phosphorylation networks in humans
Jing Li (Case Western Reserve University )
Haplotype Reconstruction in Large Pedigrees: recent development and future applications
Katsumi Kitagawa (The Ohio State University)
Long Lu (University of Cincinnati)
Using network and systems approaches to understand the mechanism of human diseases
Maqsood Chotani (The Research Institute at Nationwide Children's Hospital)
Marek Cieplak (Institute of Physics, Polish Academy of Science)
Topological features in stretching and translocation of proteins.
Mehmet Koyuturk (Case Western Reserve University)
Using Protein Interaction Networks to Understand Complex Diseases
Nathan Price (Institute of Systems Biology )
Systems approaches to molecular diagnostics
Peter Houghton (Nationwide Children's Hospital and The Ohio State University)
Pratul Agarwal (Oak Ridge National Laboratory)
Ralf Bundschuh (The Ohio State University)
Genome-wide DNA methylation profiling in cancer
Richard Ransom (The Research Institute at Nationwide Children's Hospital)
Transcriptome Sequencing of Paired Samples from Nephrotic Children: A Comparison of Bioinformatic and Statistical Analyses to Identify Critical Components Determining Steroid Response
Robert Jernigan (Iowa State University )
Extracting Dynamics Information from Multiple Structures
Robert Murphy (Carnegie Mellon University)
Learning Image-derived Models of Subcellular Organization over Time and Space
Ross Walker (University of California, San Diego)
Probing enzyme reaction pathways with advanced molecular dynamics simulations: Application to adenovirus proteases
Ruxandra Dima (University of Cincinnati)
Computational Modeling of the Nanomechanics of Large Biomolecular Filaments with roles in heart disease and cancer
Samuel K. Handelman (The Ohio State University)
PhyloPTE (Phylogeny with Path to Event): Phylogenetic reconstruction used to explore pharmacogenomics
Saras Saraswathi (Nationwide Children's Hospital)
APPLICATION OF MACHINE LEARNING AND OPTIMIZATION METHODS FOR CLASSIFICATION AND BIOMARKER DISCOVERY IN PEDEATRIC CARE
Sebastian Kmiecik (University of Warsaw)
Coarse-grained modeling of protein dynamics
Shili Lin (The Ohio State University)
Bayesian Modeling for Identifying Spatial Interactions of Chromatins
Wei Li (Baylor College of Medicine)
Computational Analysis of Cancer Epigenome
Will Ray (The Ohio State University)
Visualizing Complexity : Leveraging your eyes to select amongst too many hypotheses
William Stewart (Battelle Center for Mathematical Medicine)
Wolfgang Sadee (OSU)
Deep Sequencing and Pharmacogenomics: Frontline of Bringing Genomic Medicine to Clinical Fruition
Xavier Salvatella (Institute for Research in Biomedicine (IRB Barcelona))
Yuan Ji (NorthShore University HealthSystem / The University of Chicago)
Graphical Models for Genomics Networks
Yunlong Liu (Indiana Univ)


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