Protein and RNA Structure Prediction Conference 2011Protein Structure Prediction and Refinement
2013 Protein and RNA Structure Prediction conference |
| Chairs | Andrzej Kloczkowski (Ohio State University) Robert Jernigan (Iowa State University ) Janusz Bujnicki (International Institute of Molecular and Cell Biology in Warsaw) |
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| Date | Saturday December 3 2011 - Wednesday December 7 2011 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Advertising Opportunities | Please contact us to discuss advertising, exhibition & sponsorship opportunities at the Protein and RNA Structure Prediction conference. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Synopsis | The purpose of the Zing Conference on Protein and RNA Structure Prediction is to bring together eminent scholars with expertise in various fields of computational modeling and prediction of structure, as well as experimentalists interested in these subjects. The scope of the proposed Zing Conference conference will be much broader than Critical Assessment of Techniques for Protein Structure Prediction (CASP) meetings, which focus mostly on the analysis of the results of the CASP competition. Since computational prediction methods continuously improve and evolve towards prediction of structure of more and more complicated biological objects our conference will cover also related topics, such prediction of structure of protein complexes, protein docking; prediction of intrinsically disordered regions in proteins, RNA structure prediction and modeling of RNA-protein assemblages. New methodologies for protein structure and function prediction will be discussed, such as physics-based approaches to the structure prediction, structural flexibility models, and development of new improved coarse-grained potentials. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Confirmed oral presentations |
Programme · Talk Titles
Plenary
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| Abstract submission |
Sorry, but all abstract deadlines have passed.
To secure your place at the conference, register now. |
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Register now ( ) to secure your place. |
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Fees |
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Multiple attendance discount: 3 or more members from the same lab are eligible for a discount. Please contact us. Multiple conference discount: We can offer you a discount if you wish to attend multiple conferences. Please contact us. |
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Protein and RNA Structure Prediction conference 2011 schedule
Confirmed oral presentations
Adriaan Bax (National Institutes of Health)
A hybrid experimental and modeling approach to the study of protein structure
Andras Fiser (Albert Einstein College of Medicine)
MODELING PROTEINS USING A SUPERSECONDARY STRUCTURE LIBRARY AND NMR CHEMICAL SHIFTS
Andriy Kryshtafovych (Genome Center, University of California,)
Model quality assessment in CASP: present
Andrzej Joachimiak (Argonne National Laboratory)
Application of Structural Genomics to Novel Protein Families
Andrzej Kolinski (University of Warsaw)
Anthony Mustoe (University of Michigan)
A Coarse Grain Model for the Investigation of Topological Constraints in RNA Structure
Banu Ozkan (Arizona State University)
Structural and Functional Evolution of Proteins by Conformational Diversity
Benjamin Lewis (Iowa State University)
Interrogating protein-RNA recognition through analysis of common structural elements in interfaces
Brian Weiner (Vanderbilt University)
BCL::Fold, A novel de novo protein structure prediction method
Bruce Shapiro (NCI-Frederick)
In Silico Design, In Vitro Assembly and in Cell Delivery of RNA-based Functionalized Nanoparticles
Catherine Eichhorn (University of MIchigan)
Unraveling the Structural Complexity in a Single Stranded RNA Tail: Implications for Efficient Ligand Binding in the Prequeuosine Riboswitch
Ceslovas Venclovas (Institute of Biotechnology, Vilnius University)
Evaluation of protein three-dimensional models based on physical contacts
Daisuke Kihara (Purdue University)
Unified Molecular Representation for Protein Shape Comparison and Interaction
Debra Knisley (East Tennessee State University)
Graph Theory and Machine Learning Applied to Secondary RNA Structure
Dima Kozakov (Boston University)
Samping Macromolecular Interaction Energy Landscapes using Fast Fourier Transforms
Dominik Gront (University of Warsaw, Faculty of Chemistry)
Applications of BioShell package for protein structure analysis and modeling
Dong Xu (University of Missouri)
A linear-time algorithm for large-scale protein structure clustering
Drena Dobbs (Iowa State University)
Predicting RNA-Protein Interactions Using Only Sequence Information
Eric Westhof (University of Strasbourg)
RNA Puzzles : a CASP-like Evaluation of RNA 3D Structure Predictions
Faruck Morcos (UCSD)
Large Scale Direct Coupling Analysis of Residue-Residue Co-evolution Reveals Native Contacts in Many Domain Families
Gabriel Del Rio Guerra (Universidad Nacional Autonoma de Mexico) )
Modeling Protein Function and Protein Structure Relation as a Bijection
George Phillips (University of Wiscsonsin)
George Stan (University of Cincinnati)
Development of coarse-grained models of unfolding and translocation of substrate proteins by AAA+ nanomachines
Griselda Avila Soria (James cook university)
Structural And Functional Predictions Of Venom Proteins From A Lethal Australian Boxjellyfish.
Ilya Vakser (University of Kansas)
Ivet Bahar (University of Pittsburgh )
Protein Dynamics and Allostery: Learning from Network Models
Jianpeng Ma (Baylor College of Medicine)
Algorithms for Enhanced Sampling and Applications in Protein Folding in Explicit Solvent
Jie Liang (University of Illinois at Chicago)
Computing Conformational Entropy of RNA and Protein Loops and Structure Predictions of Pseudo-Knotted RNAs and Beta Barrel Membrane Proteins
Jinbo Xu (Toyota Technological Institute at Chicago)
RaptorX: modeling of hard protein targets with sparse sequence profile
Joanna Trylska (University of Warsaw, ICM)
Structural and thermodynamic properties of the complexes of peptide nucleic acids with ribosomal RNA
John L Markley (University of Wisconsin-Madison)
Order-disorder transitions in IscU, the scaffold protein for iron-sulfur cluster assembly and delivery
John Moult (University of Maryland)
The State of the Art in Protein Structure Modeling
Jose Onuchic (University of California San Diego)
Genomics-aided Protein Folding
Juli Feigon (UCLA)
The architecture of human telomerase RNA
Karissa Sanbonmatsu (Los Alamos National Laboratory )
Integrating simulation and experiment: ribosomes and riboswitches
Karolina Majorek (University of Virginia)
Towards structural and functional characterization of GNAT superfamily
Kevin Weeks (University of North Carolina)
High-Content Contraints for RNA Fold Prediction
Krzysztof Fidelis (Genome Center, University of California)
Using local structure building blocks in protein structure analysis and modeling
Lukasz Kurgan (University of Alberta)
New insights into computational disorder prediction
Marek Cieplak (Institute of Physics, Polish Academy of Science)
Nanoindentation of virus capsids
Michael Feig (Michigan State University)
Refinement of Homology Models: Challenges and Successes
Neocles Leontis (The National Science Foundation)
Inferring RNA 3D motifs from Sequence
Nick Grishin (University of Texas Southwestern Medical Center)
Is protein structure prediction useful?
Ralf Bundschuh (The Ohio State University)
Incorporating Biophysical Observables and RNA-Protein Interactions into RNA Secondary Structure Prediction
Ricardo Corral Corral (Instituto de Fisiologia Celular)
Identification of binding residues on protein surface.
Ruth Nussinov (National Cancer Institute, NIH)
Ruxandra Dima (University of Cincinnati)
Design of coarse-grained molecular simulations for dynamics in mechanical proteins
Sam Flores (Uppsala University)
Fast flexible fitting of structures to density maps using internal coordinates
Sandor Vajda (Boston University)
High accuracy protein docking and the prediction of encounter complexes
Shi-Jie Chen (University of Missouri)
Predicting RNA 3D Structures and the Ion Effects
Silvia Crivelli (University of California, Davis and Lawrence Berkeley Lab)
Accelerating Protein Structure Prediction Through Human- Computer Interaction
Sumudu Leelananda (Iowa State University)
Entropies of Protein Structure Ensembles
Swati Jain (Duke University)
RNA Structural Flexibility for RNA and RNA-Protein Complexes Design
Usha Muppirala (Iowa State University)
Predicting RNA-Protein Interactions Using Only Sequence Information
Weitao Sun (Zhou Pei-Yuan Center for Applied Mathematics, Tsinghua University)
From cluster to network: a log-normal residue contact model
Wladek Minor (University of Virginia)
Non-protein Components of Protein Structures and Other Biomedical Aspects of Structural Genomics and Drug Discovery
Wojciech Kasprzak (SAIC Frederick)
“Computational Approaches to Design and Modeling of Flexible RNA-based Nanostructures”
Xiaoqin Zou (University of Missouri)
Challenges and improvements in knowledge-based scoring functions: Application to protein-ligand docking Xiaoqin Zou, University of Missouri-Columbia
Yaoqi Zhou (IUPUI)
Highly accurate and high-resolution function prediction of RNA binding proteins by fold recognition and binding affinity prediction
yuanyuan huang (Iowa State University)
Statistical Bioinformatic Analysis of Residue-Level Protein Structural Properties.
Zhijun Wu (Iowa State University)
Determination of Protein Structural Fluctuations with Geometrical and Physical Constraints